Tiny worlds in desert moss: Microbes and microfauna in biological soil crusts

$0
Pledged
0%
Funded
$2,500
Goal
30
Days Left
  • $0
    pledged
  • 0%
    funded
  • 30
    days left

About This Project

Desert mosses live closely with lichens and other microorganisms, together performing vital ecosystem services. However, their associated microbe and microfauna communities are not fully characterized. We will test the hypotheses that (1) moss-associated BSCs harbor distinct microfauna and microbiome communities relative to crusts lacking moss, and (2) that their microbiomes have enhanced functional potential for plant stress mitigation.

Ask the Scientists

Join The Discussion

What is the context of this research?

Drylands cover about one-third of the United States and represent important ecological and economic resources [1]. Within these ecosystems, desert mosses are key components of biological soil crusts (BSCs)—thin, soil surface layers of bryophytes, lichens, and microorganisms that contribute to soil stability, water infiltration, and nutrient cycling [2,3]. Occupying interspaces between larger plants, these “tiny heroes” form a critical, but often overlooked, component of these ecosystems. While BSCs are well studied as functional units, roles of individual community members within BSCs are poorly understood. Emerging evidence suggests microbial symbionts may contribute to stress tolerance in BSC mosses [4,5]. BSCs may also support insect biodiversity, but this relationship is understudied in California deserts [6]. We hypothesize that moss-associated BSCs harbor microbiomes enriched for stress mitigation and that BSC cover is positively associated with arthropod diversity.

What is the significance of this project?

BSCs are a vital component of drylands and persist under extreme fluctuations in light, temperature, and water availability [1]. They also support biodiversity by providing habitat and resources for micro- and macroinvertebrates [2,3]. However, interactions within BSCs and their symbiotic partners—including microbes and arthropods—remain poorly understood. Differences in BSC successional stages are associated with distinct biochemical activity and microbial composition [4], suggesting important but unresolved functional relationships. Microarthropods, many of which remain undescribed, are known to assemble in well-developed BSCs [5], indicating potential links between microbial and arthropod diversity. This work will provide foundational insight into multi-trophic interactions in BSCs, supporting future efforts to predict dryland ecosystem function and resilience under environmental change.

What are the goals of the project?

The goal of this project is to profile the microbiome of moss and non-moss BSC's across three California deserts, and record BSC associated insect activity at each site. We will collect 24 paired moss/non-moss crusts from each site and sample insects (micro and macro arthropods) at each site while estimating moss coverage of the larger site area. Larger vegetation, animals, insects and cryptogams will be documented on an iNaturalist project to gain an ecological profile of each site. A dataset generated by this project would provide meaningful insight into functional genes within BSC microbiomes and their potential implications for stress mitigation in extreme environments. Additionally, insect-BSC interactions are understudied in this area and documentation of arthropods associated with BSC's would contribute towards the growing body of research in this topic. Datasets will be shared openly to support the California All-Taxa Biodiversity Inventory (CalATBI).

Budget

Please wait...

The proposed funds would allow another student to contribute an additional dimension to an already funded project. Field work costs enable travel to three California desert sites (Mojave, Sonoran, Great Basin) to collect soil and arthropod samples. The DNA extraction kits and lab consumables will allow processing of soil samples for sequencing using an existing Nanopore kit, to characterize taxonomy and functional potential of the microbial community. Field work equipment ensures prepared travel and high-quality data collection, while sampling materials support proper specimen collection and storage. Lab consumables enable completion of DNA extractions for high quality sequencing output. Conference expenses will support presentation of results and student professional development. These items combined support the project goals of contributing vouchered specimens and molecular data to CalATBI, while training students in hands-on research and science communication.

Endorsed by

Dr. Jenna Ekwealor and her team at San Francisco State are experts in applying genomic methods to answer novel questions in bryophyte and lichen communities. Her postbac researcher Abbey in particular is doing very interesting microbiome work as part of NSF Bay Area RaMP. Jenna's mentorship was invaluable during my MS, and this project will provide great training for the next generation of scientists. Views are my own.

Project Timeline

The project will begin in June with sampling across three desert sites, followed by DNA extraction and metagenomic sequencing. During June and July, biological soil crusts will be processed to identify cryptogams and microinvertebrates. Data analysis will continue through the summer, followed by data and voucher deposition and manuscript submission in the fall. Voucher specimens will be deposited in the SFSU Harry D. Thiers Herbarium and Entomology Collection.

Apr 25, 2026

Project Launched

Jun 01, 2026

Project launch

Jun 14, 2026

Complete desert field collections

Jul 01, 2026

DNA extraction and sequencing

Aug 01, 2026

Cryptogam crust ID and arthropod ID

Meet the Team

Abbey Schedler
Abbey Schedler
NSF RaMP Scholar

Affiliates

San Francisco State University
View Profile
Paris Hendershot
Paris Hendershot
Graduate Student

Affiliates

San Francisco State University
View Profile
Kanika Kolpe
Kanika Kolpe
Graduate Student

Affiliates

San Francisco State University
View Profile
Nio Gonzalez
Nio Gonzalez
Undergraduate Student

Affiliates

San Francisco State University
View Profile
Jenna Ekwealor, Ph.D.
Jenna Ekwealor, Ph.D.
Assistant Professor of Biology

Affiliates

San Francisco State University
View Profile

Team Bio

The team tackling the larger deserts project in the MEEP lab at San Francisco State University is made up of two masters, one post-baccalaureate, and one undergraduate student. Led by principal investigator Jenna Ekwealor, PhD, this umbrella project is investigating prominent desert mosses in the genus Syntrichia and their unique physiology that allow it to persist in extreme environments. The team is interested in all areas of moss ecology, evolution, and physiology. See our work on iNaturalist

Abbey Schedler

I'm an NSF RaMP Scholar researching moss microbiomes. I'm interested in understanding symbiotic partnerships between mosses, lichens and their respective microbiomes.

Github, Linkedin, Orchid, iNaturalist

Paris Hendershot

Hello! I am a Masters student studying cell and molecular biology at San Francisco State University! I work and conduct research in the MEEP (Moss-Ecology-Evolutionary-Physiology) lab! I completed my Bachelor's in Science at the University of California Santa Cruz, and gained a deeper love and appreciation for our ecosystems.

Kanika Kolpe

Hey y'all! I'm a graduate student studying Cell and Molecular Biology. Currently, I am studying physiological responses of Syntrichia moss to climate variation in California deserts.

Nio Gonzalez

Hi! I’m Nio and I’m an undergraduate in the MEEP lab graduating this spring with a BS in Biology (Ecology) & Race and Resistance Studies. I’m fascinated by lichen, moss, soil microbiomes, and regenerative agriculture.

Jenna Ekwealor, Ph.D.

I am an Assistant Professor of Biology at San Francisco State University, where I lead the Moss Eco-Evo-Physio (MEEP) Lab. My group integrates plant physiology, ecology, and genomics to investigate how plants adapt to terrestrial challenges. We focus on three themes: mechanisms of stress tolerance, the processes that generate and maintain reproductive and life history diversity, and the evolutionary history of adaptation to extreme environments. To address these questions, we combine field and laboratory approaches—eco-physiological assays, reproductive studies, and molecular tools such as DNA sequencing and bioinformatics.

Much of my work centers on mosses and lichens: poikilohydric organisms that equilibrate with environmental moisture, suspending metabolism during dry periods and reactivating when hydrated. Their ability to survive extreme desiccation, solar radiation, and temperature variation makes them both resilient pioneers and sensitive indicators of environmental change. My research explores how these stressors shape their life history, reproduction, and evolutionary trajectories, with a focus on water availability and microclimate.

I am committed to mentoring students and creating opportunities for hands-on research training. This project reflects that commitment by combining traditional collecting, herbarium curation, and modern sequencing in ways that are accessible to students and community members. Through this work, I aim to advance scientific understanding of cryptogams and inspire the next generation of scientists to appreciate the resilience and ecological importance of these overlooked organisms.

Lab Notes

Nothing posted yet.

Additional Information

Bryophyte specimens will be deposited in the Harry D. Thiers Herbarium, and arthropods in the SFSU Entomology Collection, with duplicates deposited in the California Academy of Sciences when possible.


Project Backers

  • 0Backers
  • 0%Funded
  • $0Total Donations
  • $0Average Donation
Please wait...

See Your Scientific Impact

You can help a unique discovery by joining 0 other backers.
Fund This Project