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What does whales' poop tell us about the deep ocean ?

$2,510
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58%
Funded
$4,350
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  • $2,510
    pledged
  • 58%
    funded
  • 10
    days left

About This Project

Over years, I have built a collection of cetacean fecal samples. While the majority of these samples are from sperm whales, the collection also includes pilot whales and Risso’s dolphins. I am currently using DNA metabarcoding to study the diet of these cetaceans in the Azores and provides insights into deep-ocean cephalopod ecology. Further genetic analysis on these samples can allow to explore new avenues and assess population structure.

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What is the context of this research?

This research focuses on sperm whales and the deep-ocean cephalopods, both of which play critical roles in marine ecosystems. The Azores archipelago, rich in marine biodiversity, serves as a key area for cephalopods, essential prey for sperm whales. Historically, extensive whale hunting has impacted the region, but the shift toward whale watching has opened new research opportunities.

This PhD project, now in its final year, has developed novel methodologies for non-invasive sampling (feces collection) to study sperm whales and their prey. Incorporating citizen science, it leverages local activity and modern molecular techniques to explore deep-ocean ecology in a sustainable manner. The project has already yielded preliminary results, with plans to expand to complementary DNA metabarcoding and microbiota-based health assessments. This research offers valuable insights into the deep-ocean ecosystem and the conservation of sperm whales.


What is the significance of this project?

Cetaceans are long-life species often located at the top of the food chain and highly mobile. As such, they are considered as sentinels’ species, indicative of the quality of the marine environment (Moore, 2004 https://doi.org/10.1644/07-MAMM-S-312R1.1). Our work has demonstrated the potential of citizen science and genetic non-invasive techniques for long-term monitoring of wildlife. The assessment of the sperm whales' diet provides the possibility to identify potential threats and is crucial to protect them. Moreover, despite their pivotal role in the world oceans and their role as our ocean health indicator, data on cephalopod distribution and relative abundance are particularly scarce, lacking for most species that inhabit the deep sea. By collecting ecological data over a wide oceanic area and across multiple years, the present study contributes to the field.


What are the goals of the project?

The main objective of this study is to study the diet of sperm whales and increase knowledge about oceanic cephalopod ecology in the Azores;

- A first specific aim is to increase the knowledge about oceanic cephalopod ecology, by analysis of species occurrence as a function of time, location and oceanographic variables, and with the collection of taxonomically relevant information

- The second specific aim is to study the diet and feeding behaviour of teuthophagous cetaceans, namely Physeteridae (the sperm whale), and to their social structure based on population genetic.

- Our final goal is to assess how the unstable population dynamics of cephalopods impact higher trophic levels of the ocean ecosystem, particularly cetaceans. Such knowledge would provide the possibility to rapidly identify potential threats to top predators arising from marine anthropogenic activities in a specific area, and to produce informed ecosystem management decisions.

Budget

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The boat trip will enable to continue the collection of non-invasive sperm whale samples in 2025, under appropriate scientific licenses, with partner local tourism companies. At sea, we collect samples left by the whales after they dive, preserving them in 96% alcohol or in eDNA filters. In the lab, we'll isolate the DNA, then amplify and sequence the cetaceans mitochondrial control region. DNA metabarcoding allow to assess cephalopods occurence. So far, we have used Ceph18S. However, to enhance the comprehensive coverage and precision of eDNA analysis in cephalopod biodiversity studies, a lineage specific multi-marker approach is recommended. Other primers sets targeting the mitochondrial 16S have proved to be complementary to the Ceph18S (de Jonge et al, 2021). The main budget would be to complement our analysis with CephMLS. Finally, to assess population genetics of the whales, we align mtDNA fragments to determine haplotypes.

Endorsed by

I have been very fortunate to collaborate with Stéphanie over the past 2 field seasons (2023 – 2024) off São Miguel. The techniques developed by Stéphanie between whale watching companies and researchers alike has made non-invasive sampling accessible to all interested to help build an extremely important knowledge base on these deep diving species with the gold dust clues they leave behind them before heading back down deep. Her results will help make a significant contribution to what we know about this species in the Azores and globally.
i am proud to be one of the advisors of Stéphanie's PhD thesis. Her work will update a decades-long gap in, and bring an entirely new perspective to, our knowledge about the ecology of mid-Atlantic deep water cephalopods. Her results will also be a proof of concept: yes, you can use deep diving cetaceans as "sampling devices", and rely on the wonderful whale watching community to bring the samples to shore.

Project Timeline

The DNA extracts will be prepared and sent for metabarcoding with CephMLS in spring 2025. From May 2025 until end of August 2025, the season will allow collection of samples to continue the research. The paper on the diet of the sperm whales will be written en submitted in September 2025 and the PhD thesis will be submitted end of October 2025.


Mar 06, 2025

Project Launched

Mar 29, 2025

Preparation of DNA extracts

Apr 30, 2025

Metabarcoding with CephMLS

Aug 31, 2025

Fieldwork 2025 completion

Sep 30, 2025

Preparation of DNA extracts of 2025 fieldwork

Meet the Team

Stephanie Suciu
Stephanie Suciu
PhD candidate

Affiliates

University of the Azores
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Stephanie Suciu

Studying the deep-ocean ecology (cephalopod) and cetaceans population genetic by collecting sperm whale non-invasive samples with a participatory science approach.

Lab Notes

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