Creating an open-source supervisory control and data acquisition software for automating bio-processes.

$7,000
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About This Project

I aim to democratize bioreactor systems by creating a lightweight, open-source SCADA (supervisory control and data acquisition) system. Bioreactors cultivate microorganisms or cells under controlled conditions, requiring sensors, pumps, and actuators to regulate variables like temperature, pH, and nutrient flow. This system will enable monitoring, data logging, and feedback control. Making automated bioreactors more accessible to researchers, startups, and labs worldwide.

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What is the context of this research?

This project addresses the lack of accessible, affordable bioprocess automation tools in plant biotechnology, critical for tackling global challenges like food security and climate resilience. Proprietary SCADA systems, essential for monitoring and controlling variables like pH, temperature, and nutrient flow, are prohibitively expensive, particularly for underserved regions. This open-source SCADA system leverages low-cost hardware (e.g., Arduino, Raspberry Pi) to democratize access to plant biotech tools, enabling real-time monitoring, process control, and data acquisition. Designed for affordability, transparency, and user-friendliness, it empowers educators, students, and researchers to engage in cutting-edge experiments. The project fosters inclusivity through multilingual support, comprehensive resources, and a global community, bridging the gap between technological innovation and equitable access in plant biology research and education.

What is the significance of this project?

This project holds significant value by democratizing access to transformative scientific tools, empowering researchers, educators, and students—particularly in underserved regions—to engage in cutting-edge plant biotechnology. By delivering an open-source SCADA system, it eliminates barriers to experimentation, fostering grassroots scientific exploration.

The project enables critical experiments to address pressing global challenges, including food security, sustainable agriculture, and climate resilience. It champions innovation, supports equitable education, and inspires a global community to advance plant biology. With a focus on affordability, transparency, and inclusivity, this initiative ensures that impactful research and education in plant biotechnology remain accessible to all, laying the groundwork for a more sustainable and equitable future.


What are the goals of the project?

The goals of this project are to develop a free and flexible system for automating bioreactors, lowering the barrier to entry for students, researchers, and scientists. By ensuring compatibility with a wide range of microcontrollers, sensors, and pumps, the project aims to work seamlessly with hardware users may already own. Collaboration with institutions like San Jose State University and Moss Landing Marine Lab will validate the software through real-world experiments, ensuring reliability and practicality.

A key goal is to support a student team in building a system that automates a bio-process and control it using this software. Additional goals include creating user manuals, translated accessibility. Finally, attending key conferences such as SLAS and LRIG will promote awareness and adoption of the system, enabling broader impact within the scientific and educational communities while fostering open-source collaboration.

Budget

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The budget enables dedicated time and resources for the development and execution of the open-source SCADA system. Funds will be used to test the software with a wide range of microcontrollers, sensors, and pumps, ensuring compatibility with diverse hardware that students and scientists may already own. This flexibility will lower the barrier to entry for adopting automated bioreactors.

Funding will support collaboration with San Jose State University and the Moss Landing Marine Lab, where qualifying experiments, and system integration tests will be conducted to validate the software in real-world applications. Resources will also be allocated to create, translate, and disseminate user manuals, ensuring the system is accessible to an international audience.

Any remaining funds will be invested in ongoing support, training, and updates for the software, ensuring long-term usability and community engagement. Attending conferences like SLAS and LRIG is planned to spread awareness.

Project Timeline

The 12-month timeline begins with research and planning as well as community outreach to identify collaborators and projects for testing. After which, core features like data acquisition and process control will be developed. The next period focuses on creating a user-friendly interface. Performance and hardware testing follow. The final phase is a pilot program to gather feedback. Once proven documentation and community outreach occur at an unscheduled pace.

Jan 20, 2025

Establish the foundation for the project. Since understanding both SCADA systems and plant biotech requirements is crucial, delays here could ripple through subsequent phases.

Mar 17, 2025

 Develop data acquisition (e.g., sensors) and develop process control features (e.g., feedback loops for nutrient flow, aeration, temperature, etc).

Apr 14, 2025

User interface development requires designing a simple, intuitive interface. The ability to select the types of pumps and sensors being used and testing basic workflows.

May 12, 2025

Performance testing poses potential blockers, such as hardware integration issues or unexpected bugs. Student teams and researchers will help identify and troubleshoot issues.

Jun 16, 2025

Pilot program's feedback from testers (educators, researchers). Time constraints on external partners or unforeseen hardware/software limitations could impact the outcomes.

Meet the Team

Andrew Silva
Andrew Silva
Mechatronic engineer for scientific automation

Affiliates

Midnight Labs, San Jose State University, Moss Landing Marine Labs
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Andrew Silva

Andrew Silva’s journey in democratizing science began during his senior project at San Jose State University, where he demonstrated leadership and innovation. Andrew guided a team of four mechanical engineering students into the unfamiliar territory of embedded device engineering. This interdisciplinary effort, in collaboration with a computer science team and scientists at Moss Landing Marine Lab, resulted in the development of an automated instrument capable of measuring phosphate and nitrogen concentrations in situ over extended periods.

Building on this foundation, Andrew has enhanced workflows and developed innovative devices and instruments for multiple biotech firms. His success in these endeavors led him to establish a consulting company, enabling him to pursue projects aligned with his interests and priorities.

Although Andrew does not currently hold positions at San Jose State University or Moss Landing Marine Lab, his collaborations with these institutions have created lasting connections. These institutions remain his top choices for piloting new software systems, whether integrating them into existing frameworks or building solutions from scratch.

Lab Notes

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Additional Information

In college I had the fortunate opportunity of leading a team that developed a programmable flow injection analysis instrument for the Moss Landing Marine Lab. The goal of that project was to develop an open source instrument that could be built by other teams around the world for the cost of the hardware. It was immensely satisfying to build an instrument that enabled scientists to take their studies into the field as well as seeing it democratize a field of study.


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