Conservation beyond planting trees: Decoding the genetic diversity of Kenya’s most replanted mangrove.

Backed by Nehemiah Ongeso
Pwani University
Kenya
BiologyEcology
$50
Pledged
2%
Funded
$4,800
Goal
27
Days Left
  • $50
    pledged
  • 2%
    funded
  • 27
    days left

About This Project

Kenya has seen extensive mangrove restoration initiatives. However, restoration success has often focused on seedling survival and forest cover, overlooking genetic diversity. This study will compare the genetic diversity between wild and replanted populations of Rhizophora mucronata, assessing whether replanted trees retain the genetic variation of their wild counterparts necessary for long-term adaptation and resilience under different environmental stressors and climate change.

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What is the context of this research?

It is estimated that along the Kenyan coast, 70% of wood requirements are met by mangroves. This Increased demand has led to degradation of the forest in many areas along the coast. Kenya has made significant efforts to restore degraded mangrove ecosystems, particularly through planting the species Rhizophora mucronata. However, restoration has largely been assessed through seedling survival, growth and forest cover, with less attention to whether replanted populations retain the genetic diversity of natural forests. Bearing in mind that mangrove populations are genetically different, restoration should not treat all propagules as genetically identical. Therefore, this study seeks to measure restoration success by testing whether the replanted populations retained the genetic diversity necessary for long-term resilience.

What is the significance of this project?

Although genetic diversity and population structure of Rhizophora mucronata have been investigated across the Western Indian Ocean, further research is needed to determine whether replanted populations along the Kenyan coast retain genetic diversity comparable to that of wild populations. Genetic diversity is essential for mangrove populations because it increases their resilience, adaptive potential and ability to survive environmental pressures. Small populations may experience inbreeding and genetic drift, reducing genetic variation and reproductive fitness, threatening long-term survival. This study addresses that gap by comparing the genetic diversity of wild and replanted stands. The findings could help identify potential losses in genetic variation, inform the selection of propagules and support restoration practices that maintain genetic diversity, ultimately enhancing the adaptive capacity of restored mangrove forests over the long term.

What are the goals of the project?

The main goal of this study is to compare the genetic diversity between wild and replanted Rhizophora mucronata and assess the genetic success of mangrove restoration in Kenya. Rhizophora species are widely used in mangrove restoration because they are fast-growing, produce highly viable propagules, and are easy to propagate in nurseries and plant. Using genome-wide RAD-seq, this study will evaluate genetic diversity, relatedness and population structure to determine whether replanted populations retain genetic variation comparable to natural wild populations or show signs of genetic bottlenecks. The findings will help determine whether genetic diversity can serve as an indicator of restoration success and inform future propagule sourcing and restoration practices to support long-term resilience and adaptive potential in replanted mangrove forests

Budget

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The funds raised will be used for transport to and from the three sampling sites, sample collection and preservation. It will also cover DNA extraction (commercial kit and other consumables), quality control (gel electrophoresis and spectrophotometric purity assessment), library preparation, RAD-seq sequencing and miscellaneous items ( stationery, coordination with field assistants, and airtime). The costs were estimated using a combination of consultations with colleagues experienced in laboratory work and publicly available information from suppliers and service providers.

As a pilot study, the findings will provide a valuable baseline that can guide future research and provide a basis for larger-scale sampling and inform improved mangrove forest restoration, conservation and propagule-sourcing practices along the Kenyan coast.

Endorsed by

I’m pleased to endorse this important project, which seeks to uncover the genetic diversity of Kenya’s most widely replanted mangrove species. Understanding this diversity is essential for informing restoration strategies that strengthen mangrove resilience, support biodiversity, and promote long-term ecosystem health. I believe Sharon Watiri’s research will make a valuable contribution to evidence-based mangrove conservation and restoration in Kenya.
I am really excited about this proposal. Sharon will help answer critical questions that provide the backbone for understanding the sustainability of replanted mangroves and the factors that shape their resilience. It is also an opportune time, as we have several sites of replanted mangroves with different timescales that would provide the contrasts.

Project Timeline

We plan to carry out the study over a period of 8 months. Sample collection will take place in December, followed by DNA extraction and quality control in January. The samples will then be transported for sequencing immediately afterwards, followed by data analysis and reporting.

Nov 11, 2026

Project Launched

Dec 01, 2026

Travel to the 3 sampling sites for sample collection

Jan 04, 2027

DNA extraction, quality control and library preparation

Feb 02, 2027

Sequencing and Data Analysis

Jun 10, 2027

Results and Reporting

Meet the Team

Sharon Watiri
Sharon Watiri
Ms

Affiliates

Pwani University, Kilifi - Kenya
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Sammy Wambua
Sammy Wambua
Dr

Affiliates

1. Research & Conservation Support Society, Kilifi - Kenya 2. Pwani University, Kilifi - Kenya 3. University of Glasgow, Glasgow - UK
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Dr. Sammy Wambua is a lecturer and conservation genomics researcher at Pwani University in Kilifi, Kenya. He is also the Head of the Pwani University Biosciences Research Centre (PUBReC) and the founding chair of the Research & Conservation Support Society (RECOURSE). His research focuses on conservation genomics, population genetics, eDNA, and metagenomics to support the conservation of tropical species. He is my supervisor and lecturer as well.

Sharon Watiri

I am passionate about biodiversity conservation and the application of genetics and genomics to protect and restore biodiversity. I am particularly motivated by the potential of genomics to inform conservation strategies, from safeguarding threatened species to supporting the recovery of degraded ecosystems. I aim to bridge molecular science and practical conservation, generating insights that can help build healthier and more resilient environments in the face of climate change and human pressures.

Sammy Wambua

I have employed molecular biology in biomedical research for over 20 years. I have recently switched to utilizing genomics to explore and protect tropical species of conservation concern. Ongoing research includes population genomics for East African corals, sea cucumber and cichlids, immunogenetics of sea turtles, and microbiome analysis of corals, seagrass, and mangroves.

Lab Notes

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