About This Project
Bleaching alerts rely on one temperature threshold, yet tropical reefs also face episodic low oxygen. The Metabolic Index, which compares oxygen supply to demand, predicts habitat limits at large scales and timescales, but has not been tested at reef scales. Using existing hourly reef records and coral physiological traits, we test whether it predicts bleaching better than degree heating weeks, how much species detail is needed, and if it works on different reefs and with different species.
Ask the Scientists
Join The DiscussionWhat is the context of this research?
Coral reefs face increasingly frequent marine heatwaves and low-oxygen episodes. Bleaching forecasts rely on degree heating weeks (DHW), a temperature-only index (Liu et al. 2005), yet reefs can change in temperature and oxygen within hours, making low oxygen a potentially hidden threat (Altieri et al. 2017; Lucey et al. 2023). As temperatures rise, corals need more oxygen while declining oxygen limits supply, pushing them toward metabolic tipping points. The Metabolic Index captures this balance using each species’ critical oxygen threshold (Pcrit) (Deutsch et al. 2015). In Panama, hourly reef data showed bleaching tracked time below these thresholds more closely than heat alone, and only a third of bleaching events reached DHW ≥4 (Lucey et al., in press). Whether this holds elsewhere in the Caribbean, and how well traits transfer across coral species, populations, and reef histories, is unknown.
What is the significance of this project?
Managers already act on DHW because it is simple and satellite-based. Oxygen is the missing piece, and it is measurable with low-cost loggers. A threshold that identifies which reefs and species that face oxygen-driven bleaching, even when heat is low, could redirect monitoring, restoration, and watershed management. In Panama, branching Acropora cervicornis bleached after two weeks of nightly low oxygen, while Siderastrea siderea needed over a month of exposure, highlighting how species differences matter. With these datasets, we can now test how transferable this approach is in different parts of the Caribbean, including Puerto Rico, where compound heat and low oxygen extremes have been intensifying.
What are the goals of the project?
We start from DHW, the operational bleaching index. Using existing hourly temperature and oxygen records and bleaching observations from available monitoring on Panamanian and Puerto Rican reefs, we will score DHW and the Metabolic Index against observed bleaching, counting alerts that preceded bleaching, alerts that did not, and bleaching events that no alert caught. To understand how much biological variation matters, we will run the Metabolic Index at three levels: (1) a lumped average of coral traits across eight common Caribbean species (broad), (2) Species-specific Pcrit traits (species), and (3) species traits plus population variability (site). We will apply each level to the highly resolved oxygen and temperature records from reefs in both countries and compare how well it predicts bleaching across different frequencies, durations, and intensities of heat and low-oxygen events. All code and data will be openly accessible.
Budget
Funds support Carolina’s stipend and tuition for 12 months to compile existing datasets, build and compare the indices, validate them against bleaching observations, and prepare open code, data, and a manuscript. No new fieldwork or laboratory costs are requested. The 8% Experiment platform fee is included as a line item.
Endorsed by
Project Timeline
The project will take place over the course of 12 months, as part of Carolina’s master research at the UPRM. During this time we will complile all bleaching datasets, environmental datasets, and physiological datasets and use the Metabolic Index to test how well bleaching predictions shape up against observations. After data integration, work will be done to submit one manuscript (i.e. Masters Thesis), and publish all code, data, and the first iteration of a Metabolic Bleaching Index Tool.
Oct 16, 2026
Q3 validation and resolution tests across both countries
Nov 03, 2026
Project Launched
Jan 01, 2027
Q1 datasets compiled
Apr 01, 2027
Q2 indices built and compared
Oct 01, 2027
Q4 open code, data and tool released; thesis and manuscript submitted
Meet the Team
We are the Marine Ecophysiology and Resilience Lucey Lab! Broadly, our research asks a simple but urgent question: How does climate change reshape life in the ocean? We are trying to understand how tropical marine organisms respond to changes across time and space, how they scale-up to impact entire ecosystems, and how this information can be transformed into conservation and nature-based solutions.
Noelle Lucey
Noelle Lucey is a marine biologist studying ecophysiology at the University of Puerto Rico Mayaguez, and leads the Marine Ecophysiology and Resilience Lucey Lab on Magueyes Marine Laboratories, on Isla Magueyes, La Parguera.
Lucey takes a multi-disciplinary approach to identifying the mechanisms underlying how cold-blooded organisms cope with multiple, intensifying anthropogenic stressors in tropical marine systems. This ecophysiology-based research targets and tests creative, field based approaches that may alleviate the most severe threats to marine life and improve future ocean health.
Lucey’s research aimed at understanding the physiological mechanisms shaping tropical marine systems is highly relevant to the field of both tropical physiology and ecology. As these field are often not well integrated, Lucey’s ability to bring organism-level physiology tools into the field to answer questions about how marine life is changing fills a much needed gap in tropical marine ecosystem research.
Carolina César-Ávila
Carolina César-Ávila is a marine biologist from Panama and who has now joined the Lucey Lab to pursue her master's degree in Marine Sciences at the University of Puerto Rico, Mayagüez, studying how corals respond physiologically to a changing ocean environment.
Before her master's, she worked as a research technician on MarineGEO and a NSF-funded project at the Smithsonian Tropical Research Institute in Bocas del Toro, Panama. Her work included monitoring coral reefs, seagrass meadows, and water quality, deploying oxygen sensors across Caribbean and Pacific reefs and conducting experiments on how Caribbean corals cope with low oxygen. She also worked in Belize, assisting with reef surveys and sample collection related to stony coral tissue loss disease.
Along the way, she has collaborated with scientists from different backgrounds, trained students, and contributed to scientific publications. These experiences deepened her curiosity about how much environmental change corals can withstand.
Today, her research explores how coral metabolism responds when extreme ocean events, including warming, low oxygen, and acidification, occur together. By studying corals' physiological limits, she hopes to better understand their ability to survive these events.
Lab Notes
Nothing posted yet.
Additional Information
The physiological traits for eight Caribbean species, the Panama and Puerto Rico reef time series already exist, so no new fieldwork or lab costs are needed. Outputs include an open, documented tool that converts logger data into a hypoxic exposure bleaching alert, a validation dataset on Dryad and GitHub, and a manuscript. Critical oxygen limit, Pcrit, is the oxygen level below which a coral can no longer sustain its resting metabolism at a given temperature, oxygen and pH condition, i.e. an environmental snapshot, and is the trait that makes this index biologically grounded.
Project Backers
- 0Backers
- 0%Funded
- $0Total Donations
- $0Average Donation


