About This Project
Annona purpurea is a culturally important fruit tree in Mesoamerica. This project asks how incipient domestication has shaped genetic diversity, population structure, morphological variation, and connectivity between wild and cultivated populations. We hypothesize that cultivated populations will exhibit morphological differentiation but limited genetic divergence due to ongoing gene flow with wild populations. Results will support conservation of genetic and biocultural diversity.
Ask the Scientists
Join The DiscussionWhat is the context of this research?
Domestication is an evolutionary process driven by human management that alters genetic diversity, population structure, gene flow, and morphological variation in plant populations, ultimately shaping their evolutionary trajectories. Understanding these processes is particularly important under current climate change scenarios, as genetic diversity underpins the adaptive potential of species and the resilience of human-managed ecosystems. However, the evolutionary consequences of domestication remain poorly understood for many native fruit trees of Mesoamerica, especially those subjected to incipient management. This project investigates genetic and morphological variation across wild and cultivated populations of Annona purpurea. We hypothesize that domestication effects will vary geographically with management intensity, producing greater morphological differentiation than genetic divergence because of ongoing gene flow with wild populations
What is the significance of this project?
The significance of this project lies in its potential to advance our understanding of contemporary evolutionary processes in Mesoamerican native trees by using Annona purpurea as a model system. Unlike intensively selected crops, A. purpurea exhibits incipient, heterogeneous domestication driven by traditional human management. By analyzing this species across its geographical distribution, this project offers a unique opportunity to evaluate how varying management practices, from wild forests to traditional homegardens, influence genetic structure, gene flow, and morphological variation. Ultimately, this research provides a crucial theoretical bridge for understanding evolutionary dynamics at the interface between wild and managed landscapes, while generating vital data to support the conservation of an underutilized resource with deep cultural, medicinal, and ecological value.
What are the goals of the project?
This project aims to understand the effects of domestication on the genetic diversity and morphological variation of Annona purpurea, a culturally and nutritionally significant native fruit tree in Mesoamerica. By sampling approximately 30 wild and cultivated populations spanning a gradient of management intensity, the project will evaluate human-driven changes using fruit size (length and width) and weight measurements, as well as hundreds of nuclear markers developed for Annonaceae. Specifically, this research will identify patterns of genetic diversity, population structure, gene flow, and morphological differentiation associated with varying degrees of domestication. Ultimately, the results will provide key insights to conserve the species' genetic resources and associated biocultural heritage, contributing to sustainable management strategies under climate change scenarios.
Budget
The requested budget supports all stages of the project. Laboratory and sequencing funds will cover DNA extraction and genotyping of approximately 250 individuals from ~30 wild and cultivated populations, generating hundreds of nuclear markers to assess genetic diversity, population structure, effective population size, and gene flow. Estimated costs average USD 20 per sample, including consumables and sequencing services, with complementary institutional support covering additional laboratory expenses. Fieldwork funds will cover travel, lodging, local transportation, and supplies for sampling across the species' range. Data-processing funds will support a workstation and external storage drives required for genomic analyses and data management. Together, these resources will enable evaluation of the evolutionary consequences of domestication and support conservation and sustainable management of this culturally important Mesoamerican fruit tree.
Endorsed by
Project Timeline
The project is divided into three phases: fieldwork and sampling from June to October 2027 when the species is fruiting, molecular sequencing from November 2027 to May 2028, and data analysis from June to August 2028.
Oct 31, 2026
Project Launched
Jun 04, 2027
Field Sampling in Eastern Mexico (June–August 2027)
Sep 17, 2027
Field Sampling in Western & Pacific Mexico (September–October 2027)
Nov 08, 2027
Laboratory Processing & Sequencing (November 2027–May 2028)
Jun 05, 2028
Data Analysis & Project Synthesis (June–August 2028)
Meet the Team
Affiliates
Affiliates
The project is supported by a multidisciplinary UNAM team.
Dr. Yuyini Licona-Vera (Instituto de Biología) is an evolutionary biologist specializing in phylogeography and population genetics, contributing to analyses of genetic diversity, structure, and gene flow.
Dr. David A. Prieto-Torres (FES-Iztacala) is an ecologist specializing in biogeography and species distribution modeling.
Together, they provide complementary expertise to evaluate domestication in Annona purpurea.
Andrés Ernesto Ortiz-Rodriguez
Botanist focusing on the systematics, evolution, and conservation of tropical forest species. My research integrates taxonomy, ecology, molecular phylogenetics, and phylogeography across varying temporal and geographic scales
David Prieto
Biogeographer and conservation scientist at UNAM's Faculty of Higher Studies Iztacala. Research integrates biogeography, ecology, phylogeography, and climate change biology to understand patterns of biodiversity distribution and inform conservation strategies across the Neotropics. Full-time Professor and advisor in the Graduate Program in Biological Sciences at UNAM
Yuyini Licona-Vera
Ornithologist focusing on the systematics, taxonomy, evolutionary genomics, and biogeography of birds and plants. My research integrates fieldwork, scientific collections, molecular phylogenetics, phylogeography, population genomics, and species distribution modeling to investigate evolutionary relationships, diversification, migration, and taxonomic boundaries across temporal and geographic scales.
Lab Notes
Nothing posted yet.
Additional Information
Annona purpurea (soncoya, chincuya, sincuya, cabeza de negro, chak koop, pool boox) is a native Mesoamerican tree distributed from Mexico to Colombia. Highly valued for its large, flavorful fruits used for self-consumption and local sale, it is not intensively cultivated. Parts like leaves, bark, roots, and seeds are used in traditional medicine and for insecticidal compounds. It is also planted for shade or ornament. Its wide ecology and diverse uses make it an ideal model to study management effects on genetic and morphological variation in Mesoamerican trees. Unlike intensively selected crops, A. purpurea represents an incipient, heterogeneous domestication system. As management varies geographically, process intensity changes: while practices like tolerance and protection maintain gene flow with surrounding forests in some regions, they may favor local isolation in others. Thus, studying it serves as a key theoretical reference to understand contemporary evolutionary processes at the wild-homegarden interface.
Project Backers
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