Jennifer Fill

Jennifer Fill

Mar 22, 2016

Group 6 Copy 85
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Making Some Noise, Making a Difference

Exciting news! The first paper is in the pipeline!

This project represents a strong collaboration of SANParks, Cape Nature, and Stellenbosch University to make a difference in the South African government's approach to managing invasive species. Over the last nine months I've been analyzing data on invasive plants in the protected areas (e.g., national parks) of the Cape Floristic Region (their distribution, density, etc.).

Given the current distribution of invasive plants in the protected areas, and the costs of managing these species in the Working for Water program, we estimated how much and how long it would cost to clear all the alien plants from these areas. As it turns out, invasive plant control would be feasible within 20 years....if some very strong assumptions are made! We make some strong recommendations to improve the efficiency of invasive alien plant control in protected areas- the last stronghold of biodiversity. This paper has exceptional importance for conserving the diverse plants and animals of fynbos. Stay tuned, you will be updated!

As an exciting development, we've been invited to do a similar analysis for Kruger National Park in the east of the country, where the savanna vegetation is plagued by a different suite of invasive plants than in fynbos. The park management staff are extremely eager to see this project through as it will help them manage invasive aliens and conserve native fauna (and megafauna!) in yet another extremely important protected area, this time in the savanna biome.

Sunset in Kruger National Park, where we met park staff to discuss a new research project

Unfortunately South Africa is experiencing an extensive drought. While we were in Kruger National Park to discuss this project, Brian noted that some of the waterholes and dams that had always been filled with water--- always- --were bone dry. I guess we'll see what this means for the little frogs when the second round of sound recordings begins in a few months.

In the meantime I have been familiarizing myself with the analysis process:

1) start with a soundbite of frog calls...

2) end up with an estimate of how many frogs are calling.

It's an interesting process of first, "telling" the software what, in all that noise, is a frog call. What characteristics does it have? How long is a frog call (milliseconds)? What is the peak frequency of the call? It's an intricate game of getting the software to spot frog calls and not bird calls, for example.

Each call is recorded in a database, including the microphones on which it was received, how loud it was, and at what time it was received. Then I take that database of information and feed it into R (analysis software) along with many other parameters and information (like the gps locations of the microphones, how many times a frog calls per minute). Voila, the end result is an estimate of frogs per hectare.

One of the cool outputs is a "map" of frog call locations. For example:

The red x's are the microphone locations, and the blue dots are frog call locations. The grey area is the boundary within which I could hear frogs calling.

Think that's cool? ......Good!! More science is on the way....

4 comments

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  • Thomas Fill
    Thomas FillBacker
    9 months already!
    Mar 29, 2016
  • Jennifer Fill
    Jennifer FillResearcher
    Going on 10! Crazy!
    Apr 06, 2016
  • Greg Frieger
    Greg FriegerBacker
    I'm glad to see that the project is going well, can't wait for more updates. Got a few questions though: 1) Different frog species croak differently, but how large is the variety of their calls within the same species? I.e. can you separate two different moss frogs and track their movement and make sure they not being counted multiple times? 2) If male frogs are the ones making calls and female frogs keep silent, how do you count them? Are you using some sort of empiric ratio to add the quiet ones?
    Mar 23, 2016
  • Jennifer Fill
    Jennifer FillResearcher
    Thanks for the questions, Greg! Most of the Arthroleptella species have just one call (and some species have very similar calls), but the moss frog Debra studied (see this lab note: https://experiment.com/u/fBntcg) has three. We're not sure exactly what each indicates, but that definitely posed a challenge for Debra's analysis. In the software I'm using, you can assign call characteristics to different species so that they are indeed recorded as such. Unfortunately, the model that we're using is still very new, and can't yet account for animal movement during the survey, but hopefully that will be incorporated over time. So for our purposes, we currently assume the animals don't move. Good observation: As for counting female frogs, we typically assume that they are in equal numbers, even in simple auditory surveys…yes, a very general assumption, unfortunately. As you can see, we still have much to learn about their basic ecology!
    Mar 24, 2016
  • Mary G Douglass
    Mary G DouglassBacker
    How exciting -- you've had a productive few months over there! I hope there will be some rain soon for the little froggies.
    Mar 23, 2016
  • Jennifer Fill
    Jennifer FillResearcher
    We so badly need the rain! My colleague who studies invasive crayfish did some fieldwork near Swaziland, visiting locations (rivers) where she'd been told the crayfish are. And the rivers are dry!
    Mar 24, 2016
  • Jennifer Fill
    Jennifer FillResearcher
    Apparently this winter is supposed to be VERY wet! :D
    Apr 07, 2016
  • Chase W. Nelson
    Chase W. NelsonBacker
    This is awesome! We <3 mapping in R—why did we EVER use ArcGIS? Haha!
    Mar 23, 2016
  • Jennifer Fill
    Jennifer FillResearcher
    Hahaha! Your message got cut off here but Experiment also sends it via email. Now all the R developers need to do is make the help as user-friendly as ArcGIS!
    Mar 24, 2016

About This Project

Tiny, cryptic moss frogs inhabit remote mountain seepages in South Africa's fiery fynbos biome. Non-native, invasive pine trees threaten this biodiversity hotspot, but restoration efforts are underway. In this project we will compare methods and outcomes of mountain fynbos restoration projects to answer the question: How do invasive pine removal strategies affect moss frog populations and effectively restore fynbos?

Blast off!

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