Arjun Dheer

Arjun Dheer

May 19, 2020

Group 6 Copy 931
4

COVID-19 and more news

Dear backers,

Before getting into this Lab Note, we first want to send our positive vibes and hope you are all staying safe – wherever you are in the world – during the COVID-19 pandemic! With things being so unpredictable lately, we feel it is important to send our best wishes to all of you and to thank you once again for your backing.

While progress has been slightly delayed due to lab shutdowns and restrictions across Germany, we have managed to complete some important steps for this study. Firstly, we finished all 500 DNA extractions at The Berlin Center for Genomics in Biodiversity Research (BeGenDiv) in March. The process was time-consuming, but I personally very much enjoyed learning these new laboratory techniques which I had never been exposed to before. And it was rewarding to handle and work on the samples which we spent many hours collecting in the field from hyenas that we know personally. Like bringing a piece of Ngorongoro back to Berlin!

A few of the first results also rolled in prior to the lockdown period, with some very interesting outcomes. For example, we had our first instances of lion and hippopotamus DNA in our samples. While hyenas are known to be flexible and opportunistic predators, the degree to which they consume other large carnivores is unknown. As such, a case of lion DNA being picked up is very exciting to see! This result was an exception, though: the majority of detections have been of wildebeest, plains zebra, and buffalo, which also happen to be the spotted hyenas' main prey in the Ngorongoro Crater based on our own observations in the field. As we hoped, DNA metabarcoding has provided us with the “inside scoop” when it comes to assessing hyena diet in the Ngorongoro Crater and allows us to detect the presence of prey animals that we might not see them eat during normal daytime observation hours.

Another positive development is that, thanks to the hard work of team member Dr. Renita Danabalan, we have been able to detect cattle DNA from beef-fed hyenas at the Tierpark Berlin, the zoo located just outside IZW premises. This was accomplished with the 12S primer. The main aim here was to determine whether the 12S primer is sufficient to detect cattle DNA and distinguish it from buffalo DNA, as cattle and buffalo are closely related. We wanted to ensure that our methods are rigorous enough to discern between the two, and it seems they are. After all, our main investigation is into any possible shifts in the hyenas’ diets towards livestock consumption over time.

More detailed results will unfortunately have to wait for now. At present, the BeGenDiv remains shut down due to COVID-19. Once it opens again, we will be sure to post another Lab Note with more news and developments from the lab side. But so far, things are heading in the right direction!

With that, we want to say thanks again for your support and continued interest, and please stay safe! Until next time…

4 comments

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  • Archana Dheer
    Archana DheerBacker
    Can "metabarcoding" be explained in simple English for a lay person?
    May 20, 2020
  • Renita Danabalan
    Renita DanabalanResearcher
    Yes :) sequencing (“reading” a particular part of the DNA you are interested in) the samples used to be done for each sample separately. It many labs this is still done. The disadvantage is that you can’t tell if a Hyena we tested had fed on more than one species. With metabarcoding you are able to combine 500 individual samples into one, because we have attached identifiers to each sample; these identifiers allows us to a) combine many samples into one tube and b) separate them post-sequencing. The advantage of metabarcoding, aside from processing a lot of samples, is that it allows us to see if the Hyena has fed on more than one species of prey. In some Hyenas we have detected 4 different species while others have had only 1 species. I hope this helped :) Renita
    May 20, 2020
  • Archana Dheer
    Archana DheerBacker
    Thank you so much! Yes, I got it now. :-)
    May 20, 2020
  • Archana Dheer
    Archana DheerBacker
    Love the mother-kid picture- they way she is holding it close. How cool! What are the hyena kids called-pup, cub?
    May 20, 2020
  • Arjun Dheer
    Arjun DheerResearcher
    Cub is correct!
    May 20, 2020
  • Michelle Lindson
    Michelle LindsonBacker
    Loved the update - thank you :)
    May 19, 2020
  • Rebecca Anne Sealfon
    Rebecca Anne SealfonBacker
    Cool progress! Really happy to hear what you have so far. And yep, hyenas eating lions is exciting. I'm fascinated by how much hyenas seem to enjoy the dominance aspect of that. There's a machismo element among both them and the traditional Masai, in the way they aggress on lions. https://africageographic.com/stories/hyena-lions-head/ Masai men used to need to kill a lion as a coming-of-age ritual. The Holekamp Lab found that hyena attacks on lions, unlike Masai attacks, were more likely to be performed by females than by males. https://www.quora.com/q/spottedhyenas/Results-on-mobbing-of-lions-hot-off-the-press-from-the-Holekamp-Lab That girl-power element of hyena attacks on lions is one of the many, many things I love about hyenas.
    May 19, 2020

About This Project

Spotted hyenas are successful carnivores that show the ability to survive in human-dominated areas. However, they can be implicated in human-wildlife conflict via livestock depredation. We will use DNA metabarcoding to assess how hyenas in the Ngorongoro Conservation Area respond to a major increase in livestock abundance. The findings will help promote balanced conservation outcomes for both people and wildlife and improve our understanding of hyena behavioral flexibility.

Blast off!

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